team

The second Digital Brain Hackathon

Sept. 28 13:00 - Sept. 30 11:00, 2025

RIKEN CBS Central Building 3F Seminar Room S305
(B/M 2.0 meeting will be held from Sept. 30 afternoon at Ito Hall, U Tokyo)

Registration Form

Aim: Test and select the standards for making our data and tools interoperable.

1) data and metadata formats
2) model description and interfaces
3) workflow/pipeline tools
4) cloud servers and interfaces
5) LLMs for helping them all

Schedule (tentative)

Sept. 28, Sunday

13:00 Opening, self-introduction

13:30 Current plan of Digital Brain development (Doya)

14:00 Review of usable standards and tools
1) data and metadata formats (Yamane)
2) model description and interfaces (Carlos)
3) workflow/pipeline tools (Carlos)
4) cloud servers and interfaces (Igarashi?)
5) LLMs for helping them all (Igarashi, Carlos)

15:00 break

15:30 grouping

16:00 Introduction of computing resources
1) Digital Brain Server (Isomura)
2) Hokusai Sailing Ship (Igarashi)
3) AWS Open Data (Doya, Carlos)

17:00 Group works

Sept. 29, Monday

9:00 Group works

13:30 mid-day updates

17:00 end-of-day reports

Sept. 30, Tuesday

9:00 Summary and action plans

11:00 Adjourn

Usable software resources

1) data and metadata formats

NWB: docs, Github
ONE
BIDS: GitHub
OpenMINDS: GitHub

2) model description and interfaces

Sonata
BMTK: GitHub
NetPyNE: GitHub
TheVirtualBrain: GitHub

3) workflow/pipeline tools

SnakeMake: GitHub
NextFlow
ReactFlow
CodeOcean
Amaretti: GitHub
Model Context Protocol: GitHub

4) cloud servers and interfaces

EBRAINS, dataset, collaboratory: GitHub
DANDI, DandiHub: GitHub
brainlife: GitHub
IBL: GitHub
OpenBrain
INCF Knowledge Space
AWS Open Data, Sponsorship Program
JupyterHub: GitHub